IL_6GZZ_324

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCCGAAACCGGGCGAGCUAGC*GCUAGGAGUGAAAAGCUAACCGAGCCCGGAGAUAGCUGG

Length

60 nucleotides

Bulged bases

6GZZ|1|A2|G|735, 6GZZ|1|A2|A|830, 6GZZ|1|A2|A|838, 6GZZ|1|A2|C|839, 6GZZ|1|A2|C|840, 6GZZ|1|A2|G|850, 6GZZ|1|A2|G|854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|720
6GZZ|1|A2|C|721
6GZZ|1|A2|C|722
6GZZ|1|A2|G|723
6GZZ|1|A2|A|724
6GZZ|1|A2|A|725
6GZZ|1|A2|A|726
6GZZ|1|A2|C|727
6GZZ|1|A2|C|728
6GZZ|1|A2|G|729
6GZZ|1|A2|G|730
6GZZ|1|A2|G|731
6GZZ|1|A2|C|732
6GZZ|1|A2|G|733
6GZZ|1|A2|A|734
6GZZ|1|A2|G|735
6GZZ|1|A2|C|736
6GZZ|1|A2|U|737
6GZZ|1|A2|A|738
6GZZ|1|A2|G|739
6GZZ|1|A2|C|740
*
6GZZ|1|A2|G|820
6GZZ|1|A2|C|821
6GZZ|1|A2|U|822
6GZZ|1|A2|A|823
6GZZ|1|A2|G|824
6GZZ|1|A2|G|825
6GZZ|1|A2|A|826
6GZZ|1|A2|G|827
6GZZ|1|A2|U|828
6GZZ|1|A2|G|829
6GZZ|1|A2|A|830
6GZZ|1|A2|A|831
6GZZ|1|A2|A|832
6GZZ|1|A2|A|833
6GZZ|1|A2|G|834
6GZZ|1|A2|C|835
6GZZ|1|A2|U|836
6GZZ|1|A2|A|837
6GZZ|1|A2|A|838
6GZZ|1|A2|C|839
6GZZ|1|A2|C|840
6GZZ|1|A2|G|841
6GZZ|1|A2|A|842
6GZZ|1|A2|G|843
6GZZ|1|A2|C|844
6GZZ|1|A2|C|845
6GZZ|1|A2|C|846
6GZZ|1|A2|G|847
6GZZ|1|A2|G|848
6GZZ|1|A2|A|849
6GZZ|1|A2|G|850
6GZZ|1|A2|A|851
6GZZ|1|A2|U|852
6GZZ|1|A2|A|853
6GZZ|1|A2|G|854
6GZZ|1|A2|C|855
6GZZ|1|A2|U|856
6GZZ|1|A2|G|857
6GZZ|1|A2|G|858

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain E2

50S ribosomal protein L4

Chain K2

50S ribosomal protein L15

Chain R2

50S ribosomal protein L22

Chain c2

50S ribosomal protein L34