IL_6GZZ_325

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGUG*CUC

Length

7 nucleotides

Bulged bases

6GZZ|1|A2|U|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_325 not in the Motif Atlas

Homologous match to IL_9DFE_020

Geometric discrepancy: 0.3929

The information below is about IL_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

6GZZ|1|A2|G|787
6GZZ|1|A2|G|788
6GZZ|1|A2|U|789
6GZZ|1|A2|G|790
*
6GZZ|1|A2|C|805
6GZZ|1|A2|U|806
6GZZ|1|A2|C|807

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain c2

50S ribosomal protein L34