IL_6GZZ_341

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUG*CG

Length

6 nucleotides

Bulged bases

6GZZ|1|A3|U|65

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZZ_341 not in the Motif Atlas

Homologous match to IL_4LFB_005

Geometric discrepancy: 0.3056

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6GZZ|1|A3|C|63
6GZZ|1|A3|G|64
6GZZ|1|A3|U|65
6GZZ|1|A3|G|66
*
6GZZ|1|A3|C|96
6GZZ|1|A3|G|97

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain T3

30S ribosomal protein S20