3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6H4N_007 not in the Motif Atlas
Homologous match to IL_5J7L_251
Geometric discrepancy: 0.0879
The information below is about IL_5J7L_251
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6H4N|1|A|C|239
6H4N|1|A|C|240
6H4N|1|A|A|241
6H4N|1|A|G|242
6H4N|1|A|U|243
6H4N|1|A|A|244
6H4N|1|A|G|245
*
6H4N|1|A|C|253
6H4N|1|A|G|254
6H4N|1|A|A|255
6H4N|1|A|A|256
6H4N|1|A|C|257
6H4N|1|A|G|258

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15

Coloring options:


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