IL_6H4N_068

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6H4N|1|A|A|1801, 6H4N|1|A|C|1816, 6H4N|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0954

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6H4N|1|A|U|1798
6H4N|1|A|G|1799
6H4N|1|A|C|1800
6H4N|1|A|A|1801
6H4N|1|A|A|1802
6H4N|1|A|A|1803
6H4N|1|A|C|1804
*
6H4N|1|A|G|1813
6H4N|1|A|G|1814
6H4N|1|A|A|1815
6H4N|1|A|C|1816
6H4N|1|A|G|1817
6H4N|1|A|U|1818
6H4N|1|A|A|1819
6H4N|1|A|U|1820
6H4N|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA