IL_6H4N_083

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_083 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4837

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

6H4N|1|A|G|2110
6H4N|1|A|U|2111
6H4N|1|A|G|2112
6H4N|1|A|U|2113
6H4N|1|A|A|2114
6H4N|1|A|G|2115
6H4N|1|A|G|2116
6H4N|1|A|A|2117
6H4N|1|A|U|2118
6H4N|1|A|A|2119
6H4N|1|A|G|2120
*
6H4N|1|A|C|2178
6H4N|1|A|C|2179

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain w

Transfer RNA; tRNA