IL_6H4N_095

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6H4N|1|A|G|2576, 6H4N|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_095 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0705

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

12

Unit IDs

6H4N|1|A|C|2510
6H4N|1|A|U|2511
6H4N|1|A|C|2512
*
6H4N|1|A|G|2574
6H4N|1|A|C|2575
6H4N|1|A|G|2576
6H4N|1|A|A|2577
6H4N|1|A|G|2578

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3