IL_6H4N_098

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_098 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1981

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

6H4N|1|A|G|2588
6H4N|1|A|A|2589
6H4N|1|A|A|2590
6H4N|1|A|C|2591
*
6H4N|1|A|G|2603
6H4N|1|A|U|2604
6H4N|1|A|U|2605
6H4N|1|A|C|2606

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2