IL_6H4N_127

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6H4N|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_127 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1261

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6H4N|1|a|G|147
6H4N|1|a|G|148
6H4N|1|a|A|149
6H4N|1|a|U|150
6H4N|1|a|A|151
6H4N|1|a|A|152
6H4N|1|a|C|153
*
6H4N|1|a|G|168
6H4N|1|a|C|169
6H4N|1|a|U|170
6H4N|1|a|A|171
6H4N|1|a|A|172
6H4N|1|a|U|173
6H4N|1|a|A|174
6H4N|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20