IL_6H4N_138

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H4N_138 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.0978

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6H4N|1|a|G|450
6H4N|1|a|A|451
6H4N|1|a|A|452
6H4N|1|a|G|453
6H4N|1|a|G|454
6H4N|1|a|G|455
*
6H4N|1|a|C|477
6H4N|1|a|A|478
6H4N|1|a|U|479
6H4N|1|a|U|480
6H4N|1|a|G|481
6H4N|1|a|A|482
6H4N|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16