3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6H58_139 not in the Motif Atlas
Geometric match to IL_4WFL_001
Geometric discrepancy: 0.21
The information below is about IL_4WFL_001
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_87767.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6H58|1|AA|G|875
6H58|1|AA|C|876
6H58|1|AA|A|877
6H58|1|AA|A|878
6H58|1|AA|G|879
*
6H58|1|AA|C|898
6H58|1|AA|A|899
6H58|1|AA|A|900
6H58|1|AA|C|901
6H58|1|AA|C|902

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain MM
50S ribosomal protein L16

Coloring options:


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