IL_6H58_197

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_197 not in the Motif Atlas

Geometric match to IL_7RQB_089

Geometric discrepancy: 0.088

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

6H58|1|AA|C|2350
6H58|1|AA|G|2351
6H58|1|AA|A|2352
6H58|1|AA|G|2353
*
6H58|1|AA|C|2364
6H58|1|AA|G|2365
6H58|1|AA|A|2366
6H58|1|AA|G|2367

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain 33

50S ribosomal protein L35

Chain OO

50S ribosomal protein L18

Chain WW

50S ribosomal protein L27