IL_6H58_202

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_202 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.1083

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6H58|1|AA|A|2459
6H58|1|AA|U|2460
6H58|1|AA|A|2461
*
6H58|1|AA|U|2489
6H58|1|AA|G|2490
6H58|1|AA|U|2491
6H58|1|AA|U|2492
6H58|1|AA|U|2493

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain MM

50S ribosomal protein L16