IL_6H58_208

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAAC*GUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_208 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.198

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6H58|1|AA|G|2588
6H58|1|AA|A|2589
6H58|1|AA|A|2590
6H58|1|AA|C|2591
*
6H58|1|AA|G|2603
6H58|1|AA|U|2604
6H58|1|AA|U|2605
6H58|1|AA|C|2606

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2