IL_6H58_306

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_306 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1236

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6H58|1|aa|C|132
6H58|1|aa|U|133
6H58|1|aa|G|134
6H58|1|aa|C|135
6H58|1|aa|C|136
*
6H58|1|aa|G|227
6H58|1|aa|A|228
6H58|1|aa|U|229
6H58|1|aa|G|230

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain pp

30S ribosomal protein S16

Chain tt

30S ribosomal protein S20