IL_6H58_333

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6H58_333 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0928

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6H58|1|aa|C|779
6H58|1|aa|A|780
6H58|1|aa|A|781
6H58|1|aa|A|782
6H58|1|aa|C|783
*
6H58|1|aa|G|799
6H58|1|aa|G|800
6H58|1|aa|U|801
6H58|1|aa|A|802
6H58|1|aa|G|803

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain kk

30S ribosomal protein S11

Chain uu

30S ribosomal protein S21