IL_6HA1_008
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAGUAG*CGAAACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HA1_008 not in the Motif Atlas
- Homologous match to IL_4WF9_009
- Geometric discrepancy: 0.089
- The information below is about IL_4WF9_009
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6HA1|1|A|C|241
6HA1|1|A|U|242
6HA1|1|A|G|243
6HA1|1|A|A|244
6HA1|1|A|G|245
6HA1|1|A|U|246
6HA1|1|A|A|247
6HA1|1|A|G|248
*
6HA1|1|A|C|256
6HA1|1|A|G|257
6HA1|1|A|A|258
6HA1|1|A|A|259
6HA1|1|A|A|260
6HA1|1|A|C|261
6HA1|1|A|G|262
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
Coloring options: