IL_6HA1_012
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAC*GAGUGAAAGAGAUC
- Length
- 18 nucleotides
- Bulged bases
- 6HA1|1|A|G|550, 6HA1|1|A|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HA1_012 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.1594
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6HA1|1|A|G|528
6HA1|1|A|C|529
6HA1|1|A|A|530
6HA1|1|A|C|531
*
6HA1|1|A|G|542
6HA1|1|A|A|543
6HA1|1|A|G|544
6HA1|1|A|U|545
6HA1|1|A|G|546
6HA1|1|A|A|547
6HA1|1|A|A|548
6HA1|1|A|A|549
6HA1|1|A|G|550
6HA1|1|A|A|551
6HA1|1|A|G|552
6HA1|1|A|A|553
6HA1|1|A|U|554
6HA1|1|A|C|555
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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