IL_6HA1_036

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6HA1|1|A|A|1189

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_036 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.113

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6HA1|1|A|U|1064
6HA1|1|A|U|1065
6HA1|1|A|A|1066
6HA1|1|A|A|1067
6HA1|1|A|G|1068
6HA1|1|A|U|1069
6HA1|1|A|G|1070
*
6HA1|1|A|C|1186
6HA1|1|A|U|1187
6HA1|1|A|A|1188
6HA1|1|A|A|1189
6HA1|1|A|A|1190

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L13