IL_6HA1_046
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAGUAG*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HA1_046 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.0947
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
6HA1|1|A|A|1302
6HA1|1|A|U|1303
6HA1|1|A|G|1304
6HA1|1|A|A|1305
6HA1|1|A|G|1306
6HA1|1|A|U|1307
6HA1|1|A|A|1308
6HA1|1|A|G|1309
*
6HA1|1|A|U|2040
6HA1|1|A|G|2041
6HA1|1|A|A|2042
6HA1|1|A|A|2043
6HA1|1|A|A|2044
6HA1|1|A|U|2045
6HA1|1|A|U|2046
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
Coloring options: