IL_6HA1_067

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

6HA1|1|A|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_067 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.279

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6HA1|1|A|U|1756
6HA1|1|A|G|1757
6HA1|1|A|U|1758
6HA1|1|A|U|1759
6HA1|1|A|A|1760
6HA1|1|A|G|1761
*
6HA1|1|A|C|1772
6HA1|1|A|G|1773
6HA1|1|A|A|1774
6HA1|1|A|G|1775
6HA1|1|A|A|1776

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA