IL_6HA1_069

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

6HA1|1|A|G|1830, 6HA1|1|A|A|1845, 6HA1|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1249

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6HA1|1|A|U|1827
6HA1|1|A|G|1828
6HA1|1|A|C|1829
6HA1|1|A|G|1830
6HA1|1|A|A|1831
6HA1|1|A|A|1832
6HA1|1|A|G|1833
*
6HA1|1|A|C|1842
6HA1|1|A|G|1843
6HA1|1|A|A|1844
6HA1|1|A|A|1845
6HA1|1|A|G|1846
6HA1|1|A|U|1847
6HA1|1|A|A|1848
6HA1|1|A|U|1849
6HA1|1|A|A|1850

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA