IL_6HA1_108

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_108 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1046

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

6HA1|1|A|U|2872
6HA1|1|A|G|2873
6HA1|1|A|G|2874
6HA1|1|A|A|2875
6HA1|1|A|A|2876
6HA1|1|A|G|2877
*
6HA1|1|A|U|2890
6HA1|1|A|G|2891
6HA1|1|A|G|2892
6HA1|1|A|A|2893
6HA1|1|A|G|2894

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19