IL_6HA1_113
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HA1_113 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.142
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HA1|1|B|C|69
6HA1|1|B|G|70
6HA1|1|B|A|71
6HA1|1|B|U|72
6HA1|1|B|G|73
6HA1|1|B|G|74
6HA1|1|B|U|75
6HA1|1|B|A|76
6HA1|1|B|G|77
*
6HA1|1|B|U|95
6HA1|1|B|G|96
6HA1|1|B|A|97
6HA1|1|B|G|98
6HA1|1|B|A|99
6HA1|1|B|G|100
6HA1|1|B|U|101
6HA1|1|B|A|102
6HA1|1|B|G|103
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L27
- Chain Z
- 50S ribosomal protein L30
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