IL_6HA1_117

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUAAU*AGG

Length

9 nucleotides

Bulged bases

6HA1|1|a|C|50, 6HA1|1|a|A|53

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_117 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.139

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6HA1|1|a|C|49
6HA1|1|a|C|50
6HA1|1|a|U|51
6HA1|1|a|A|52
6HA1|1|a|A|53
6HA1|1|a|U|54
*
6HA1|1|a|A|367
6HA1|1|a|G|368
6HA1|1|a|G|369

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12