IL_6HA1_132

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUGAAG*CGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_132 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1942

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6HA1|1|a|U|417
6HA1|1|a|G|418
6HA1|1|a|A|419
6HA1|1|a|U|420
6HA1|1|a|G|421
6HA1|1|a|A|422
6HA1|1|a|A|423
6HA1|1|a|G|424
*
6HA1|1|a|C|435
6HA1|1|a|G|436
6HA1|1|a|U|437
6HA1|1|a|A|438
6HA1|1|a|A|439
6HA1|1|a|A|440
6HA1|1|a|G|441

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4