IL_6HA1_137

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6HA1|1|a|A|581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_137 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0965

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6HA1|1|a|C|578
6HA1|1|a|G|579
6HA1|1|a|U|580
6HA1|1|a|A|581
6HA1|1|a|A|582
6HA1|1|a|A|583
6HA1|1|a|G|584
*
6HA1|1|a|C|890
6HA1|1|a|G|891

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17