IL_6HA1_149

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_149 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.0846

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6HA1|1|a|C|788
6HA1|1|a|G|789
6HA1|1|a|A|790
6HA1|1|a|A|791
6HA1|1|a|C|792
*
6HA1|1|a|G|808
6HA1|1|a|G|809
6HA1|1|a|U|810
6HA1|1|a|A|811
6HA1|1|a|G|812

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11