IL_6HA1_167

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HA1_167 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.2178

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6HA1|1|a|C|1268
6HA1|1|a|G|1269
6HA1|1|a|A|1270
6HA1|1|a|A|1271
*
6HA1|1|a|U|1282
6HA1|1|a|A|1283
6HA1|1|a|A|1284
6HA1|1|a|G|1285

Current chains

Chain a

16S ribosomal RNA

Nearby chains