IL_6HCF_007

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCC*GCGG

Length

7 nucleotides

Bulged bases

6HCF|1|52|C|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_007 not in the Motif Atlas

Homologous match to IL_8C3A_008

Geometric discrepancy: 0.3759

The information below is about IL_8C3A_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCF|1|52|C|124
6HCF|1|52|C|125
6HCF|1|52|C|126
*
6HCF|1|52|G|142
6HCF|1|52|C|143
6HCF|1|52|G|144
6HCF|1|52|G|145

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain G3

eL8

Chain N3

Ribosomal protein L15

Chain X3

uL23

Chain h3

uL29