IL_6HCF_020

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUCCG*CGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_020 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.2546

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6HCF|1|52|G|482
6HCF|1|52|G|483
6HCF|1|52|U|484
6HCF|1|52|C|485
6HCF|1|52|C|486
6HCF|1|52|G|487
*
6HCF|1|52|C|669
6HCF|1|52|G|670
6HCF|1|52|G|671
6HCF|1|52|C|672

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain r3

eL28