IL_6HCF_028

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAGGCC*GCAGCAGCAGCUC

Length

20 nucleotides

Bulged bases

6HCF|1|52|A|935, 6HCF|1|52|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|731
6HCF|1|52|A|732
6HCF|1|52|A|733
6HCF|1|52|G|734
6HCF|1|52|G|735
6HCF|1|52|C|736
6HCF|1|52|C|737
*
6HCF|1|52|G|927
6HCF|1|52|C|928
6HCF|1|52|A|929
6HCF|1|52|G|930
6HCF|1|52|C|931
6HCF|1|52|A|932
6HCF|1|52|G|933
6HCF|1|52|C|934
6HCF|1|52|A|935
6HCF|1|52|G|935|||A
6HCF|1|52|C|936
6HCF|1|52|U|937
6HCF|1|52|C|938

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain F3

uL30

Chain M3

Ribosomal protein L14

Chain S3

eL20