IL_6HCF_030

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAGGUGGC*GUGUUACAGCC

Length

21 nucleotides

Bulged bases

6HCF|1|52|G|748, 6HCF|1|52|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|744
6HCF|1|52|G|745
6HCF|1|52|A|746
6HCF|1|52|A|747
6HCF|1|52|G|748
6HCF|1|52|G|749
6HCF|1|52|U|750
6HCF|1|52|G|751
6HCF|1|52|G|752
6HCF|1|52|C|753
*
6HCF|1|52|G|910
6HCF|1|52|U|911
6HCF|1|52|G|912
6HCF|1|52|U|913
6HCF|1|52|U|914
6HCF|1|52|A|915
6HCF|1|52|C|916
6HCF|1|52|A|917
6HCF|1|52|G|918
6HCF|1|52|C|919
6HCF|1|52|C|920

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain M3

Ribosomal protein L14

Chain S3

eL20