IL_6HCF_041

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCCGUC*GGUGGAGC

Length

15 nucleotides

Bulged bases

6HCF|1|52|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|1466
6HCF|1|52|C|1467
6HCF|1|52|C|1468
6HCF|1|52|C|1469
6HCF|1|52|G|1470
6HCF|1|52|U|1471
6HCF|1|52|C|1472
*
6HCF|1|52|G|1492
6HCF|1|52|G|1493
6HCF|1|52|U|1494
6HCF|1|52|G|1495
6HCF|1|52|G|1496
6HCF|1|52|A|1497
6HCF|1|52|G|1498
6HCF|1|52|C|1499

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain Q3

eL18

Chain a3

uL15

Chain b3

eL29