IL_6HCF_048

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6HCF|1|52|U|1591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_048 not in the Motif Atlas

Geometric match to IL_4V9F_029

Geometric discrepancy: 0.2238

The information below is about IL_4V9F_029

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6HCF|1|52|C|1590
6HCF|1|52|U|1591
6HCF|1|52|G|1592
*
6HCF|1|52|C|1603
6HCF|1|52|G|1604

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain j3

Ribosomal protein L37