IL_6HCF_062
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCCCGAUGC*GGG
- Length
- 13 nucleotides
- Bulged bases
- 6HCF|1|52|G|1919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_062 not in the Motif Atlas
- Geometric match to IL_3GM7_006
- Geometric discrepancy: 0.2103
- The information below is about IL_3GM7_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6HCF|1|52|C|1911
6HCF|1|52|G|1912
6HCF|1|52|C|1913
6HCF|1|52|C|1914
6HCF|1|52|C|1915
6HCF|1|52|G|1916
6HCF|1|52|A|1917
6HCF|1|52|U|1918
6HCF|1|52|G|1919
6HCF|1|52|C|1920
*
6HCF|1|52|G|2063
6HCF|1|52|G|2064
6HCF|1|52|G|2065
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain F3
- uL30
- Chain O3
- uL13
- Chain S3
- eL20
- Chain f3
- eL33
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