IL_6HCF_071

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUAGG*CCGG

Length

9 nucleotides

Bulged bases

6HCF|1|52|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_071 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.2673

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6HCF|1|52|C|2311
6HCF|1|52|U|2312
6HCF|1|52|A|2313
6HCF|1|52|G|2314
6HCF|1|52|G|2315
*
6HCF|1|52|C|2324
6HCF|1|52|C|2325
6HCF|1|52|G|2326
6HCF|1|52|G|2327

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 82

5.8S ribosomal RNA; 5.8S rRNA

Chain e3

eL32

Chain r3

eL28