IL_6HCF_080

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6HCF|1|52|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_080 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3212

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6HCF|1|52|C|2646
6HCF|1|52|A|2647
6HCF|1|52|G|2648
*
6HCF|1|52|C|2685
6HCF|1|52|G|2686
6HCF|1|52|U|2687
6HCF|1|52|G|2688

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain g3

eL34