IL_6HCF_087
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6HCF|1|52|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_087 not in the Motif Atlas
- Geometric match to IL_7RQB_068
- Geometric discrepancy: 0.1823
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6HCF|1|52|C|2867
6HCF|1|52|G|2868
6HCF|1|52|U|2869
6HCF|1|52|A|2870
6HCF|1|52|A|2871
6HCF|1|52|C|2872
*
6HCF|1|52|G|2877
6HCF|1|52|G|2878
6HCF|1|52|A|2879
6HCF|1|52|U|2880
6HCF|1|52|A|2881
6HCF|1|52|A|2882
6HCF|1|52|G|2883
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain R3
- eL19
- Chain n3
- eL41
- Chain p3
- eL43
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