IL_6HCF_095

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCAAAUGCCUCG*CGCGCAU

Length

20 nucleotides

Bulged bases

6HCF|1|52|A|3785, 6HCF|1|52|C|3791, 6HCF|1|52|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|3780
6HCF|1|52|C|3781
6HCF|1|52|C|3782
6HCF|1|52|A|3783
6HCF|1|52|A|3784
6HCF|1|52|A|3785
6HCF|1|52|U|3786
6HCF|1|52|G|3787
6HCF|1|52|C|3788
6HCF|1|52|C|3789
6HCF|1|52|U|3790
6HCF|1|52|C|3791
6HCF|1|52|G|3792
*
6HCF|1|52|C|3808
6HCF|1|52|G|3809
6HCF|1|52|C|3810
6HCF|1|52|G|3811
6HCF|1|52|C|3812
6HCF|1|52|A|3813
6HCF|1|52|U|3814

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain j1

eRF1(AAQ)

Chain n3

eL41