IL_6HCF_108

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_108 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2304

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6HCF|1|52|U|4295
6HCF|1|52|U|4296
6HCF|1|52|G|4297
*
6HCF|1|52|C|4314
6HCF|1|52|A|4315

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain Q3

eL18

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42