IL_6HCF_110

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACCUU*AAGC

Length

10 nucleotides

Bulged bases

6HCF|1|52|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|4347
6HCF|1|52|A|4348
6HCF|1|52|C|4349
6HCF|1|52|C|4350
6HCF|1|52|U|4351
6HCF|1|52|U|4352
*
6HCF|1|52|A|4362
6HCF|1|52|A|4363
6HCF|1|52|G|4364
6HCF|1|52|C|4365

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain L3

eL13

Chain Q3

eL18

Chain a3

uL15

Chain o3

eL42