IL_6HCF_126

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGCUU*AAUGGGGC

Length

14 nucleotides

Bulged bases

6HCF|1|52|A|4656, 6HCF|1|52|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|4637
6HCF|1|52|U|4638
6HCF|1|52|G|4639
6HCF|1|52|C|4640
6HCF|1|52|U|4641
6HCF|1|52|U|4642
*
6HCF|1|52|A|4655
6HCF|1|52|A|4656
6HCF|1|52|U|4657
6HCF|1|52|G|4658
6HCF|1|52|G|4659
6HCF|1|52|G|4660
6HCF|1|52|G|4661
6HCF|1|52|C|4662

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain W3

eL24

Chain d3

eL31