IL_6HCF_131

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAACG*CUCGCC

Length

13 nucleotides

Bulged bases

6HCF|1|52|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|4890
6HCF|1|52|G|4891
6HCF|1|52|A|4892
6HCF|1|52|A|4893
6HCF|1|52|A|4894
6HCF|1|52|C|4895
6HCF|1|52|G|4896
*
6HCF|1|52|C|4924
6HCF|1|52|U|4925
6HCF|1|52|C|4926
6HCF|1|52|G|4927
6HCF|1|52|C|4928
6HCF|1|52|C|4929

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain M3

Ribosomal protein L14

Chain O3

uL13