IL_6HCF_134

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGG*CUCG

Length

7 nucleotides

Bulged bases

6HCF|1|52|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_134 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2631

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

6HCF|1|52|C|4996
6HCF|1|52|G|4997
6HCF|1|52|G|4998
*
6HCF|1|52|C|5052
6HCF|1|52|U|5053
6HCF|1|52|C|5054
6HCF|1|52|G|5055

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain d3

eL31