IL_6HCF_143
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGGAUG*CGCCUG
- Length
- 13 nucleotides
- Bulged bases
- 6HCF|1|72|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_143 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3218
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HCF|1|72|U|79
6HCF|1|72|U|80
6HCF|1|72|G|81
6HCF|1|72|G|82
6HCF|1|72|A|83
6HCF|1|72|U|84
6HCF|1|72|G|85
*
6HCF|1|72|C|92
6HCF|1|72|G|93
6HCF|1|72|C|94
6HCF|1|72|C|95
6HCF|1|72|U|96
6HCF|1|72|G|97
Current chains
- Chain 72
- 5S ribosomal RNA
Nearby chains
- Chain 52
- Large subunit ribosomal RNA; LSU rRNA
- Chain F3
- uL30
- Chain I3
- 60S ribosomal protein L10
- Chain S3
- eL20
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