IL_6HCF_146
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 6HCF|1|A1|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HCF_146 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3186
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
6HCF|1|A1|C|37
6HCF|1|A1|A|38
6HCF|1|A1|A|39
6HCF|1|A1|A|40
*
6HCF|1|A1|U|514
6HCF|1|A1|G|515
6HCF|1|A1|A|516
6HCF|1|A1|C|517
6HCF|1|A1|G|518
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- eS4
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain Z1
- eS24
Coloring options: