IL_6HCF_157

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_157 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.331

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6HCF|1|A1|C|188
6HCF|1|A1|U|189
6HCF|1|A1|G|190
6HCF|1|A1|A|191
6HCF|1|A1|C|192
*
6HCF|1|A1|G|207
6HCF|1|A1|G|208
6HCF|1|A1|A|209
6HCF|1|A1|U|210
6HCF|1|A1|G|211

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain J1

eS8