IL_6HCF_159

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUC*GAC

Length

7 nucleotides

Bulged bases

6HCF|1|A1|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_159 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3169

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HCF|1|A1|G|312
6HCF|1|A1|A|313
6HCF|1|A1|U|314
6HCF|1|A1|C|315
*
6HCF|1|A1|G|335
6HCF|1|A1|A|336
6HCF|1|A1|C|337

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain H1

40S ribosomal protein S6