IL_6HCF_167

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6HCF|1|A1|U|488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HCF_167 not in the Motif Atlas

Homologous match to IL_4V88_407

Geometric discrepancy: 0.2662

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6HCF|1|A1|U|487
6HCF|1|A1|U|488
6HCF|1|A1|A|489
*
6HCF|1|A1|U|511
6HCF|1|A1|A|512

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

eS4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Z1

eS24

Chain k1

ATP binding cassette subfamily E member 1